Antigen

Antigen Class

TFs and others

Antigen

TRERF1

Cell type

Cell type Class

Pluripotent stem cell

Cell type

iPS cells

NA

NA

Sample

sample_type

cell line

sex

male

dev stage

adult

age

30 year

donor ID

ENCDO882UJI

lab

Michael Snyder, Stanford

source

Richard Myers

cell line

WTC11

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/5b07895e-e5e2-49c3-8334-0325f6980b1d/@@download/attachment/ENCODE_Snyder_ChIP-SeqBiorupterTruSeqprotocol_V2.pdf

Sequencing Platform

instrument_model

Illumina NovaSeq 6000

hg38

Number of total reads

48133168

Reads aligned (%)

98.0

Duplicates removed (%)

17.8

Number of peaks

1494 (qval < 1E-05)

hg19

Number of total reads

48133168

Reads aligned (%)

97.5

Duplicates removed (%)

18.0

Number of peaks

702 (qval < 1E-05)