Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRERF1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

sample_type
cell line
sex
male
dev stage
adult
age
30 year
donor ID
ENCDO882UJI
lab
Michael Snyder, Stanford
source
Richard Myers
cell line
WTC11

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/5b07895e-e5e2-49c3-8334-0325f6980b1d/@@download/attachment/ENCODE_Snyder_ChIP-SeqBiorupterTruSeqprotocol_V2.pdf

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
48133168
Reads aligned (%)
98.0
Duplicates removed (%)
17.8
Number of peaks
1494 (qval < 1E-05)

hg19

Number of total reads
48133168
Reads aligned (%)
97.5
Duplicates removed (%)
18.0
Number of peaks
702 (qval < 1E-05)

Base call quality data from DBCLS SRA